Publications
(names in bold are UHD students)
Pope WH, Bowman CA, Russell DA, Jacobs-Sera D, Asai DJ, Cresawn SG, Jacobs WR, Hendrix RW, Lawrence JG, Hatfull GF; Science Education Alliance Phage Hunters, includes UHD students Rush Alexander, Pilgrim Benjamin, Linus Klingler, Kimberly Menendez, and Aziz Sidra and Drs. Griffard, Sadana, Saha, and Uzman. (2015) Advancing Genomics and Evolutionary Science; Phage Hunters Integrating Research and Education; Mycobacterial Genetics Course. Whole genome comparison of a large collection of mycobacteriophages reveals a continuum of phage genetic diversity. elife, 4:e06416. doi: 10.7554/eLife.06416.
Uzman, A., Johnson, J., Eichberg, J., Widger, W., K., Voet, D., Voet, J., Pratt, C.W. (2012) Student Companion to Accompany Fundamentals of Biochemistry, 4th Edition, Fundamentals of Biochemistry, 4th edition, by Voet, Voet, and Pratt. John Wiley & Sons, Inc. New York. (previous editions, 2008, 2006, 1999)
Yerrapragada, Shaila, Shukla, Animesh, Hallsworth-Pepin, Kymberlie, Choi, Kwangmin, Wollam, Aye, Clifton, Sandra, Qin, Xiang, Muzny, Donna, Raghuraman, Sriram, Ashki, Haleh, Uzman, Akif, Highlander, Sarah K., Fryszczyn Bartlomiej G., Fox, George E., Tirumalai, Madhan R., Liu, Yamei, Kim, Sun, Kehoe, David M., Weinstock, George M. (2015) Extreme Sensory Complexity Encoded in the 10-Megabase Draft Genome Sequence of the Chromatically Acclimating Cyanobacterium Tolypothrix sp. PCC 7601. Genome Announcements. 3(3): e00355-15
Tecarro, E., Bui, T., Lisi, M., Sater, A., and Uzman, A. (2009). A simple model of two interacting signaling pathways in embryonic Xenopus laevis. Discrete and Continuous Dynamical Systems Supplement 2009, 753-760.
Highlander, S.K., Hulten, K., Qin, X., Jiang, H., Yerrapragada, S., Mason, E., Shang, Y. Williams, T., Fortunov, R., Liu, Y., Igboeli, O., Petrosino, J., Tirumalai, M., Uzman, A., Fox, G., Cardenas, A.M., Muzny, D.M., Hemphill, L., ding, Y., Dugan, S., Blyth, P.R., Buhay, C.J., Dinh, H.H., Hawes, A.C., Holder, M., Kovar, C.L., Lee, S.L., Lui, W., Nazareth, L.V., Wang, Q., Zhou, J., Kaplan, S., and Weinstock, G. (2007) Subtle genetic changes enhance virulence of methicillin resistant and sensitive Staphylococcus aureus BMC Microbiol. 7(1): 99 doi:10.1186/1471-2180-7-99
Gioia, J, Yerrapragada, S, Qin, X, Jiang, H, Igboeli, OC, Muzny, D, Shannon Dugan-Rocha, S, Ding, Y, Hawes, A, Wen Liu, W, Perez, L, Kovar, C, Dinh, H, Lee, S, Nazareth, L, Blyth, P, Holder, M, Buhay, C, Madhan R. Tirumalai, MR, Liu, Y, Dasgupta, I, Bokhetache, L, Fujita, M, Karouia, F, Moorthy, PE, Siefert, J, Uzman, A, Buzumbo, P, Verma, A, Zwiya, H, McWilliams, BD, Olowu, A, Clinkenbeard, KD, Newcombe, D, Golebiewski, L, Petrosino, JF, Nicholson, WL, Fox, GE, Kasthuri Venkateswaran, K, Highlander, SK, and Weinstock, GM (2007) Paradoxical DNA Repair and Peroxide Resistance Gene Conservation in Bacillus pumilus SAFR-032. PLoS ONE 2(9): e928. doi:10.1371/journal.pone.0000928
Petrosino, J.F., Xiang, Q., Karpathy, S.E., Huaiyang Jiang, H., Yerrapragada, S., Liu, Y., Gioia, J., Hemphill, L., Gonzalez, A., Raghavan, T.M., Uzman, A., Fox, G.E., Highlander, S., Reichard, M., Morton, R.J., Clinkenbeard, K.D., and George M. Weinstock, G.M. (2006) Chromosome Rearrangement and Diversification of Francisella tularensis revealed by the Type B (OSU18) genome sequence. J. Bacteriology, 188(19), 6977-85.
Patil, S.S., Alexander, T.B., Uzman, J. A., Lou, C.-H., Gohil, H., and Sater, A. K. (2006) The novel gene ashwin functions in Xenopus cell survival and anteroposterior pattern. Developmental Dynamics 235, 1895-907
Awards
Vision and Change Leadership Fellow / PULSE Fellow, Partnership for Undergraduate Life Science Education (PULSE); http://www.pulsecommunity.org; founded and supported by HHMI, NIGMS, and NSF. 2012 - present
